Protein Info for Atu4011 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 123 to 140 (18 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 240 to 257 (18 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details PF00892: EamA" amino acids 6 to 140 (135 residues), 39.6 bits, see alignment E=2.9e-14 amino acids 152 to 278 (127 residues), 46.9 bits, see alignment E=1.6e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4011)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFY1 at UniProt or InterPro

Protein Sequence (294 amino acids)

>Atu4011 hypothetical protein (Agrobacterium fabrum C58)
MPSAKTGFLYALVAFTIFAAQDGISKHLGSAYPPVFVAMLRYWAFAVFVLLMAARSAGGI
RGAVMANRPWLQISRGVLLAVQIVFSIFSFAVVGLAHSHSILASAPLIVAALSMPLLGEH
VGWRRWCAIFVGFIGVLVILKPDGDGFDNKLIITFVAAFMLALYSVLTRLGSKSDSAMTS
FFYTGVAGAAALTLVGPFYWVPLAPQDWGWMLALCITGMSGHYCLIKAFELADAASVQPF
SYYQLVLVSIIGVTIYGEVVTSNMVTGAAIVIAAGLFTIWREHVVARRNRREAN