Protein Info for Atu4002 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 57 (19 residues), see Phobius details amino acids 63 to 84 (22 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 187 to 209 (23 residues), see Phobius details amino acids 222 to 245 (24 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details PF00892: EamA" amino acids 5 to 136 (132 residues), 62.9 bits, see alignment E=2e-21 amino acids 157 to 295 (139 residues), 57.7 bits, see alignment E=8.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4002)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFX8 at UniProt or InterPro

Protein Sequence (297 amino acids)

>Atu4002 hypothetical protein (Agrobacterium fabrum C58)
MVIYELAAVGAATCWAMTGLISARPAGHLGALAFNRTRQLFVASVLGLYVLASGTWRDLQ
PDALWALLLSGFIGIFVGDTLLFTCLNRLGPRRSGILFALNAPIAAVLGWAILGEQLSAT
AVAGIGLTLAGVLLAILFGKRKSQLHAWESVKGPLWLGVLFGLLAALSQAVGSLIARPVM
ASGVDPIAASMLRVGVAAICLTALTMLPIKAVKPNGSLTVSIFLRTVLTGSIGLGFGMTL
LLFALSGGKVGIVSTLSATTPVIILPLLWLRTGERPASGAWVGAALVVIGMALVFWR