Protein Info for Atu3984 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 229 to 248 (20 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 351 to 372 (22 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details PF05977: MFS_3" amino acids 8 to 529 (522 residues), 822.8 bits, see alignment E=1.7e-251 PF07690: MFS_1" amino acids 23 to 366 (344 residues), 111.3 bits, see alignment E=7.5e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3984)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFW7 at UniProt or InterPro

Protein Sequence (532 amino acids)

>Atu3984 MFS permease (Agrobacterium fabrum C58)
MSAAKSSASSFAPLAQPVFAVLWAATVLGNTGSFMRDVASSWLMTDLSASPAAVALVQAA
GTLPIFLLAIPAGVLTDILDRRKFLIAVQLLLASVSVTLMVLAHTGMLSVSALIGLTFLG
GIGAALMGPTWQAIVPELVKREDIKSAVALNSLGINIARSIGPAVGGILLAAFGAAFTYG
ADVASYFFVIAALLWWPRAKNANNALQENFFGAFRAGLRYTRASRPLHVVLLRAAIFFAF
ASAVWALLPLVARQLLGGDASFYGILLGAVGAGAIAGALVMPKLRARFDADGLLLGAAIV
TALVMAGLSFAPPKWLAIIILLFLGGAWITALTTLNGAAQAILPNWVRGRGLAVYLTVFN
GAMTAGSIGWGAVGEAAGVPGTLLIGAAGLFIAGLIMHRLKLPAGDADMVPSNHWPEPLV
AEPVAHDRGPVLILIEYTVEKDHRSAFLHALDELSQERRRDGAYGWGVTEDSADPQKIVE
WFMVESWAEHLRQHKRVSNADADLQGKVLAYHSGLEKPVVRHFLTINRPGKA