Protein Info for Atu3974 in Agrobacterium fabrum C58

Annotation: ice nucleation-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1731 PF20080: ALTTAQ_rpt" amino acids 21 to 53 (33 residues), 32.1 bits, see alignment (E = 1.8e-11) amino acids 237 to 274 (38 residues), 35.9 bits, see alignment (E = 1.2e-12) amino acids 253 to 290 (38 residues), 41.2 bits, see alignment (E = 2.7e-14) amino acids 269 to 305 (37 residues), 34.3 bits, see alignment (E = 3.6e-12) amino acids 350 to 386 (37 residues), 32.1 bits, see alignment (E = 1.8e-11) amino acids 389 to 425 (37 residues), 30.5 bits, see alignment (E = 5.7e-11) amino acids 402 to 434 (33 residues), 26.5 bits, see alignment (E = 1e-09) amino acids 429 to 466 (38 residues), 29.9 bits, see alignment (E = 9.1e-11) amino acids 462 to 489 (28 residues), 29.4 bits, see alignment (E = 1.3e-10) amino acids 549 to 586 (38 residues), 27 bits, see alignment (E = 7.2e-10) amino acids 652 to 689 (38 residues), 28 bits, see alignment (E = 3.6e-10) amino acids 680 to 712 (33 residues), 27.2 bits, see alignment (E = 6.4e-10) amino acids 748 to 785 (38 residues), 27.3 bits, see alignment (E = 5.8e-10) amino acids 757 to 793 (37 residues), 33.1 bits, see alignment (E = 8.9e-12) amino acids 780 to 817 (38 residues), 39.6 bits, see alignment (E = 8e-14) amino acids 788 to 825 (38 residues), 40 bits, see alignment (E = 6e-14) amino acids 796 to 833 (38 residues), 41.3 bits, see alignment (E = 2.5e-14) amino acids 860 to 897 (38 residues), 37.1 bits, see alignment (E = 4.9e-13) amino acids 916 to 952 (37 residues), 26.9 bits, see alignment (E = 7.6e-10) amino acids 988 to 1025 (38 residues), 33.9 bits, see alignment (E = 5.1e-12) amino acids 1025 to 1057 (33 residues), 29.2 bits, see alignment (E = 1.4e-10) amino acids 1052 to 1089 (38 residues), 30.3 bits, see alignment (E = 6.6e-11) amino acids 1093 to 1121 (29 residues), 26.7 bits, see alignment (E = 9.2e-10) amino acids 1124 to 1160 (37 residues), 34.4 bits, see alignment (E = 3.6e-12) amino acids 1212 to 1248 (37 residues), 34.6 bits, see alignment (E = 3e-12) amino acids 1234 to 1264 (31 residues), 28.6 bits, see alignment (E = 2.2e-10) amino acids 1269 to 1297 (29 residues), 33.2 bits, see alignment (E = 8.5e-12) amino acids 1292 to 1320 (29 residues), 30.4 bits, see alignment (E = 6.1e-11) amino acids 1349 to 1377 (29 residues), 30.1 bits, see alignment (E = 7.5e-11) amino acids 1374 to 1400 (27 residues), 30.7 bits, see alignment (E = 4.9e-11) amino acids 1404 to 1441 (38 residues), 30.2 bits, see alignment (E = 7.4e-11) amino acids 1484 to 1511 (28 residues), 30 bits, see alignment (E = 8.2e-11) amino acids 1484 to 1521 (38 residues), 33.7 bits, see alignment (E = 5.7e-12)

Best Hits

KEGG orthology group: None (inferred from 54% identity to atu:Atu3974)

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFW3 at UniProt or InterPro

Protein Sequence (1731 amino acids)

>Atu3974 ice nucleation-like protein (Agrobacterium fabrum C58)
MTSIIASLNVNQIRYLSTEAVAAWTTEDVASLSTTQIKALSSDQIAALDVEDVKILNSQQ
LSAISQGAIVGLTLDQLNILDQYAIKSLSASQVSALTTTQFHALTTDQAEALTSSQVRVL
SSAQLAALSAEDIATFSTADMAAITAKAMPGLGTEVIAGLTPDQIAALNISAIASLTTEQ
IAILSPQQAEALTPAQVRVLSSLQLAALGTDDIATFSAADIAAITGKAITGLSIEAIAEL
TSDRVAALNASAIAGLTTEQIEALSTAQIAALTTAQIAALKTTHVAALSTSQVEALSPLQ
VRSLTASQLAVLSAEDIATFSTADIAAITGTAMPRLSTEAIGTLTLDQIAALTTAQLNAL
SSAQFQALSAGQVEALSATHIAALSTGVIASLTADQIEAFSTRQVEALSAAQVKLLNSAQ
IAALSPDDIATFSTADIAAIAGKAISGLSTGAIAALTTAQIAALTTGAIASLTDDQIEAL
STSQVAALSPTQVKSLSSTQLAALSVEDLATFSSADLAAITGKAMSGLNTDVIAALTAAQ
IAAFGASAIAGLTSDQVEALSGSQVSLLSTTQIKALSSTQVAALGSDVAALSTSQTAVLS
AASIKGLTPEQIAILRPDQFSALTTAQIAALSSGQITAMGASNIASLSMAQIAAISTSSM
TGLSTGQIAALSTEQISRLSSRQMAMLSSAQIAALGTEAVAALSTAQISGLSAAGISGLS
KQQVATFSTAQVEALTSAQILNFSSMHIAELGTEDLAKFTTKDIAAISSSAIAGLSAEAI
ASLTTAQIAALNTQSINALSTAQIAALTTAQVEALTSTQVNALTSKQIAALSTDDIATFS
TKDIAAINSDAIAGLSAETIASLATGQIAALNVRSIAALSTVQIVALTTAQVEALTTVQV
GALSSTQLAVLSTDDIATFSTRDMAALGSSAIAGLSKDTVASLTTAQIGALSMAGISGLS
TGQIAALTGDQLNVLTNTQIAALTSKQVAAFDVSDITALSTGQIAALSAAGAAGLTTDQI
AALSTDQVGAMTSGQIAALSAKQIAALGTDDIATFSTGDIAALSSNAVAGLSRDTVASLT
TAQIAALSSAGISGLGTGQIAGLTSEQVNVLTNAQISALTSKQVAALEVTDIASLSAAQI
AAIGAAGVAGLTTDQIAALSISQVEALTSAQIAALNSKQIAALSADDLAIFTTAEMAAIG
SGAISGLPASTIASLTTAQIAALGAAAVSGLTTDQIAALGTGQVDALTNAQIGALTSKQV
TALSVSGIGSLSSAQIAALSTAGVAGLTTDQIAALSTSQVEALTSVQIAALSSKQIAALG
ADDLDIFTTAEIASIGSSAVAGLSASTIASLTTAQIAALGTAAVSGLTTDQIVALGTGQL
NGLTSAQIGALTSRQVAALSATGIAALTKGQIAALDAKAVAGLGSAQAGALSVEQVEALS
TRQIAALTSDALQGLSTDMLETFSPDELAAIGAGAIKGLSTNFIAALSTAEVAALSTAGV
SGLTSEQVDALGKDRIEALSTSQITALSSSGLAGLTLEDMGTFSSGELAAISSTAIRGLS
NSVVASLSSESIAALTTGQVASLSYGQIAAMDAAQIGALSTSQVSALSARQAAALGADDL
TTFSAEQIISLSSSAIPGLSTSTLAGLTTSQAAAFTPGQIAAMTSAQVTALNSSKPANSS
VQEIASFLSTPAAATSSAQDSTGNTSGSVGTSTTAQDSSDVASAILSYLDV