Protein Info for Atu3922 in Agrobacterium fabrum C58

Annotation: replication initiation protein RepC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 PF03428: RP-C" amino acids 13 to 186 (174 residues), 241.1 bits, see alignment E=6.4e-76 PF11800: RP-C_C" amino acids 314 to 413 (100 residues), 121.3 bits, see alignment E=1.9e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3922)

Predicted SEED Role

"Plasmid replication protein RepC" in subsystem Plasmid replication

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTM5 at UniProt or InterPro

Protein Sequence (425 amino acids)

>Atu3922 replication initiation protein RepC (Agrobacterium fabrum C58)
MDSTCVTTPFGRRAMSFGVLATQFAAQKTRKVEAVDKWKLYRSVCEARPLLGVTDRSLAV
LNALLSFYPKNELSSEAGLVVFPSNTQLSLRAHGMAEQTLRRHLSALVEAGLIIRKDSPN
GKRYARKHRGGEISEAYGFSLAPLLARKTEIEELAERIISERLDLQRLRESISLCRRDIQ
KLCEMIAAHGDLKTFDGFQTRYNAIANSLGRNSKAAELKEIAGFLASLRAEVTNYLENIE
KSEKSGGNDCQNERLIKNSESESISERQDLREAVTVAPASTAIAQPTYVAPISAKPVPPS
PKAVLHKQFFVPDIVLVLKACPDISLYAPGGAITGWRDLEVATSVIKTMFNVSQSAYQEA
LTTFGRQGTAAILACLLQKADQISSLGGYLRNLTRKAQEGCFDMQTMLLAQLRGRQDKME
VGMAG