Protein Info for Atu3912 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF02682: CT_C_D
  • amino acids 1 to 190 (190 residues), 229 bits, E=4.5e-72
• TIGR00724: biotin-dependent carboxylase uncharacterized domain
  • amino acids 229 to 520 (292 residues), 243.2 bits, E=1.7e-76
• PF02626: CT_A_B
  • amino acids 251 to 517 (267 residues), 273.3 bits, E=2.5e-85

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3912)

Predicted SEED Role

"Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)" (EC 3.5.1.54)

MetaCyc Pathways

• uracil degradation III (5/5 steps found)
• L-citrulline degradation (3/3 steps found)
• urea degradation I (3/3 steps found)
• L-arginine degradation V (arginine deiminase pathway) (3/4 steps found)
• cyanate degradation (2/3 steps found)
• cyanuric acid degradation II (3/5 steps found)
• superpathway of allantoin degradation in yeast (3/6 steps found)
• cyanuric acid degradation I (2/5 steps found)
• allantoin degradation IV (anaerobic) (4/9 steps found)
• superpathway of atrazine degradation (3/8 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism
• Atrazine degradation
• Urea cycle and metabolism of amino groups

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.54

Use Curated BLAST to search for 3.5.1.54

Sequence Analysis Tools

See Q7CTL7 at UniProt or InterPro

Protein Sequence (536 amino acids)

>Atu3912 hypothetical protein (Agrobacterium fabrum C58)
MRFLPVSLTTILVELADLDETLALFASLQSDPVEGIEETVPAARTLMIRFRPEKINVQAL
AARLASRDLSAKIAPSDNLVEIPVHYDGEDLADVAELTGMSVEEVIRRHTESEFTVAFCG
FAPGFGYLVGGDPALHVPRRQSPRTRIPAGSVALAGAFSGVYPQNSPGGWQIIGTTPVKM
WDIDRDPGALFQPGYRVRFFDMDKAGRTVDIPAPAPAKKEPKKDGPHFEVLAAPMPAIFQ
DLGRFGQTGQGVSASGALDRGAFNGANRIVGNPANTPCLELTLGGFSFKSTSRAVIGITG
APCPVTIKTADRSFVAKTDGPVSLEAGDVVTFGQPPKGMRCYLAVRGGFDIEPVLGSFAT
DTLAVVGPDPVGAGAVLPLKSEKAGLSSVSISEIPAFEPPATGEVVTLDVVLGPRADWFT
QKGIETLTGQLWQVTPQSNRVGIRLAGDVPVERKDSAELPSEGTATGAIQIPHSGQPVLF
LADHPLTGGYPVIGAVAEYHLDLAGQIPVNAKIKFRPIGPFAEIAAKNTEFGGEDR