Protein Info for Atu3888 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 9 to 25 (17 residues), see Phobius details amino acids 31 to 50 (20 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 277 to 301 (25 residues), see Phobius details PF13593: SBF_like" amino acids 7 to 317 (311 residues), 346.8 bits, see alignment E=1.2e-107 PF01758: SBF" amino acids 68 to 214 (147 residues), 39.4 bits, see alignment E=5.5e-14

Best Hits

KEGG orthology group: K14347, solute carrier family 10 (sodium/bile acid cotransporter), member 7 (inferred from 100% identity to atu:Atu3888)

Predicted SEED Role

"Sodium - Bile acid symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFT0 at UniProt or InterPro

Protein Sequence (339 amino acids)

>Atu3888 hypothetical protein (Agrobacterium fabrum C58)
MTRFLPDRFTMMLVATVILASILPISGEPAVYFGLATKLAIALLFFLHGARLSRDVVIAG
ILHWRLHLVILLVTFGLFPLLGVAIGFIPESILPAPLYMGVLFLCVLPSTVQSSIAFTSM
AGGNVPAAICSASASNIFGMFLTPLLVGLLFTVGGHGGGFSLDAFLQIFLQLLLPFIIGQ
ALQPWIGEWIRARKKLLSPVDRGSILMVVYLAFSDAVIEGIWHTFSLRDIGVVILINIVL
LAIVLCVTMFGSRILGFDKADEITITFCGSKKSLASGVPMAGAIFAGQSIGAIVLPIMLF
HQIQLMVCAVLAQRYARKAHEKAAIAETAAAEGAAASAR