Protein Info for Atu3866 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 PF04174: CP_ATPgrasp_1" amino acids 94 to 386 (293 residues), 279.9 bits, see alignment E=4e-87 PF14403: CP_ATPgrasp_2" amino acids 94 to 472 (379 residues), 462 bits, see alignment E=2.2e-142 PF04168: Alpha-E" amino acids 520 to 800 (281 residues), 200.3 bits, see alignment E=8.8e-63

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3866)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFS0 at UniProt or InterPro

Protein Sequence (801 amino acids)

>Atu3866 hypothetical protein (Agrobacterium fabrum C58)
MSKAPATERKTETTARPRGLDYSTLPGVADEMLDTNGEVRPVWKTLLAALSRMSERELHE
RFARTDRYLRDAGVFYRDYGKGSSERNWPISHIPVLIDDREWTVLSEGLKQRANLLEAMV
ADFYGENRLVKEGYVPPALIASNPEYLRPMVGVKPASGHYLHFCSFEIGRGPDGNWWVLA
DRTQAPSGAGFALENRVATTRALSDIYAETHVHRLASFFGAFRDALQAHRKHPDERIAVL
TPGPANETYFEHAYIARYLGFMLLEGEDLTVVNGRVMVRTVAGLKPIGVLWRRLDASYSD
PLELNQHSHIGTPGMVQALRNEALTVVNALGSGILETRALLAFMPRVCRHILGEELKLPS
IATWWCGQESERRHVAGNIEGMVIGPAYSRLPFFDDNGQSVLGSSLRETAKESISDWLAS
DGHRLVGQEVVKLSTTPAYIDNKLVPRPMSLRVFAARTQDGWQIMPGGFARIGSGDDVSA
IAMQSGGSAADVWIVSDKPVERTTLLPAEESFIRNMPGSLPSRAADNLFWLGRYIERSEG
ALRILRAWHGRYAESADPRQPLLAHVTGYLEALDVEMNDAVPESLLNNINSALYSASNIR
DRFSPDGWLALNDLAKTARRFHAKVAPGDDATHAMTILLRKLAGFAGLVHENMYRFTGWR
FLSIGRYLERGLHMTRLLGHMTGPDAPDGSYDMLLEIGDSVMTHRRRYNVNTAGLTVTDL
LALDPLNPRSILFQLNEIRTEVEQLPNAFVNGQMSPFYREAMRLHSGLAVMTPENMNGAI
YRQLETDMEHLSDVLARTYLG