Protein Info for Atu3795 in Agrobacterium fabrum C58

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 361 to 379 (19 residues), see Phobius details amino acids 391 to 413 (23 residues), see Phobius details amino acids 428 to 451 (24 residues), see Phobius details amino acids 463 to 492 (30 residues), see Phobius details amino acids 521 to 542 (22 residues), see Phobius details amino acids 854 to 874 (21 residues), see Phobius details amino acids 881 to 901 (21 residues), see Phobius details amino acids 907 to 930 (24 residues), see Phobius details amino acids 956 to 976 (21 residues), see Phobius details amino acids 982 to 1006 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1004 (998 residues), 512 bits, see alignment E=1.5e-157

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3795)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFN7 at UniProt or InterPro

Protein Sequence (1023 amino acids)

>Atu3795 AcrB/AcrD/AcrF family protein (Agrobacterium fabrum C58)
MKKFNLSDWALEHRSLVWYFMLVFVLAGVFSYLNLGREEDPNFTIKTMVISAQWPGASAE
EVARQVTDRIEKKLEELDNLDHLRSQTVAGRTTIFVELVPETKARNVEPTWVRVRNMIGD
IKGEFPSGVVGPFFNDRFGDVYGNIYAFTSDGLSQRQLRDLVEDARAKVLTVDDIGKVDV
IGAQDEAIYLEFSTRQIAALGIDQQSIIKTLQSQNAVTQSGFVNAGPERVALRVSGQFTS
EDSLRSINLRVNNRFFPLTEVATIRRGYVDPPSSLFRFNGQPAIGLAIGMKTGANLLHFG
EALDAQMKRVVADLPVGVDVHRVSDQPAVVDEAVSGFTSALFEAIAIVLVISFISLGLRA
GMVVAVSIPLVLAITFVYMEYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEVGD
DLRKAATYVYTSTAFPMLTGTLVTVAGFIPVGLNNSAAGEFTFTLFVVIAVSLIVSWIVA
VLFTPLLGVTILPKTMKSHHEKKGRFASGFSWLLGRALRWRWVTIVATVALFALSIGGMS
LVQQQFFPSSDRVELIVDWNLPQNSSIAETNRQMAQFEQEMLAKNTDIDHWTTYVGEGAP
RFILSFDVQTPDVTFGQTVIVTKGLDVRDKVRAELQDYLDRTFIGTDAFVKLLDIGPPVG
KPVQYRLSGPDIQKVRELGQQLSGIVGEHRLLSNLVMDWNEPTRVVKVDVLQDKARQLGV
SSEDIANAMNSIVEGSTVTQVRDDIYLVNVVARAQLAERGSIETLQNLQLPATNGKAVPL
SAIANFRYELEQPTIWRRDRIPTVTVKAAIIGPTQPATIVEQLKPKLEAFEKMLPVGYKL
ETGGSVESSADSQAPIVAVVPLMLFAMATILMVQLQSFSRLFLVFAVAPTALIGVVVALL
FSNAPMGFVAILGVLALIGILIRNSVILVVQIEHLRSEGVSAWRAVIEATEHRMRPIMLT
AAAATLALIPISREIFWGPMAYAMMGGIVVGTALTLLFLPALYVAWFRIPREDDKPEGHD
VTA