Protein Info for Atu3765 in Agrobacterium fabrum C58

Annotation: oligoendopeptidase F

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 616 TIGR02290: oligoendopeptidase, pepF/M3 family" amino acids 28 to 611 (584 residues), 741.3 bits, see alignment E=5.4e-227 PF08439: Peptidase_M3_N" amino acids 134 to 203 (70 residues), 68 bits, see alignment E=6.7e-23 PF01432: Peptidase_M3" amino acids 218 to 598 (381 residues), 154.9 bits, see alignment E=4.8e-49

Best Hits

KEGG orthology group: K08602, oligoendopeptidase F [EC: 3.4.24.-] (inferred from 100% identity to atu:Atu3765)

Predicted SEED Role

"Oligoendopeptidase F (EC 3.4.24.-)" (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CT92 at UniProt or InterPro

Protein Sequence (616 amino acids)

>Atu3765 oligoendopeptidase F (Agrobacterium fabrum C58)
MTLHRPAPHPVFSLAETSGPVLGDLPGWKLSDLYPSGDSPEYKRDLEKAASMAAAFEAKW
KDKLESAAKAKGEDGIGAALKDYEALDDLIGRIGSFAGLTYFSDTSNPANGKLYGDAQAK
LTEISAHLLFFTLELNRIDDAVMDACMANDAAAGHYRPWLVDLRKDKPHQLDDQLEQLFL
EKSMTSAAAFNRLFDETMADLRFDIDGASLSLEVTLNMLQEPEPETRRKAAEALSATFKD
NLRVFTLITNTLAKDKDISDRWRNFEDIADSRHLANRVERDVVDALAAAVKKAYPRLSHR
YYAMKAKWLGMEQMNYWDRNAPLPDTSNTIIPWDEAKDTVLSAYGNFAPEMADIARRFFD
EEWIDAPARPGKAPGAFAHPTVPSAHPYVLVNYLGKPRDVMTLAHELGHGVHQVLAGQQG
ALMCATPLTLAETASVFGEMLTFRKLLDDTKDIRERKAMLARKVEDMINTVVRQIAFYEF
ERKLHTARKEGELTSEQIGELWLSVQAESLGPAIRISEGYETWWTYIPHFIHSPFYVYAY
AFGDCLVNSLYAVYQKAEAGFQEKYFELLKAGGTKHHSELLKPFGLDATDPSFWDKGLSM
IEGLIDELEELDRKQA