Protein Info for Atu3689 in Agrobacterium fabrum C58

Annotation: iron(III ABC transporter permease dicitrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 252 to 279 (28 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details PF01032: FecCD" amino acids 34 to 341 (308 residues), 297 bits, see alignment E=7.4e-93

Best Hits

Swiss-Prot: 43% identical to YFIZ_BACSU: Probable siderophore transport system permease protein YfiZ (yfiZ) from Bacillus subtilis (strain 168)

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 100% identity to atu:Atu3689)

MetaCyc: 38% identical to ferric enterobactin ABC transporter membrane subunit FebD (Escherichia coli K-12 substr. MG1655)
ABC-10-RXN [EC: 7.2.2.17]

Predicted SEED Role

"Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1)" (TC 3.A.1.14.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFJ4 at UniProt or InterPro

Protein Sequence (349 amino acids)

>Atu3689 iron(III ABC transporter permease dicitrate ABC transporter permease (Agrobacterium fabrum C58)
MTSFRGLSKAERPIHPRPAEFFCSVLLLLAIAGLLVSAMLAIMAGPAPLSPSTVLSAIFR
FDGSRDHLVVTLLRLPRVAAAMIAGAGLAVSGAIMQAVTKNPLASPGLLGINAGAAFAVV
ASLSITGVSGDALVWYAFGGAAFAAFCVFFIGSIGRVGATPLIMVLAGAVVATFLTSLTT
AILIFDQTTLDAVRLWTVGSLSGRTMEHVFAVVPYWLAGLLGSLLLARHLTTLSLGTDVA
TALGQNPALWRSLSVVIVILLSGSAVALVGPVGFVGLVVPHIVRLAISVDYRWIIPFSAV
IGAIMVVIADLAGRIILANQSFPVGVTMALIGAPFFLWLARYRAGAGRP