Protein Info for Atu3682 in Agrobacterium fabrum C58

Annotation: non-ribosomal peptide synthetase, siderophore biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2399 transmembrane" amino acids 287 to 304 (18 residues), see Phobius details amino acids 1733 to 1752 (20 residues), see Phobius details amino acids 1772 to 1791 (20 residues), see Phobius details PF00668: Condensation" amino acids 46 to 486 (441 residues), 316.6 bits, see alignment E=6.6e-98 amino acids 1130 to 1525 (396 residues), 120.9 bits, see alignment E=1.5e-38 PF00501: AMP-binding" amino acids 508 to 844 (337 residues), 268.6 bits, see alignment E=2e-83 amino acids 1552 to 1893 (342 residues), 284.3 bits, see alignment E=3.3e-88 TIGR01733: amino acid adenylation domain" amino acids 528 to 918 (391 residues), 406.6 bits, see alignment E=1.1e-125 amino acids 1573 to 1973 (401 residues), 416 bits, see alignment E=1.5e-128 PF00550: PP-binding" amino acids 1006 to 1070 (65 residues), 56.3 bits, see alignment (E = 7.9e-19) amino acids 2290 to 2352 (63 residues), 49.1 bits, see alignment (E = 1.4e-16) PF00881: Nitroreductase" amino acids 2031 to 2208 (178 residues), 68.8 bits, see alignment 1.7e-22 TIGR03605: SagB-type dehydrogenase domain" amino acids 2045 to 2205 (161 residues), 88.3 bits, see alignment 4.1e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3682)

Predicted SEED Role

"iron aquisition yersiniabactin synthesis enzyme (Irp2)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFJ1 at UniProt or InterPro

Protein Sequence (2399 amino acids)

>Atu3682 non-ribosomal peptide synthetase, siderophore biosynthesis protein (Agrobacterium fabrum C58)
MNEFYAKLANLSPERRRLIEQRLAERGYQSALDTVIPGREEGDVERPLSFAQQRLWFMQQ
LEPENTAYNMRSILRFRGKLDRAALEEALANVVKRHEPLRTRFVPGADGFPELDILAAGD
AEIEFLDLGQDSDAEATARQHVLQRLSVPYDLSHPQLRVMLVRLSAEDHLLAVGLHHIAG
DRWSMTVLARDLAGFYKDRTGQSHHLPDIRVQYADWAIWQGKMLRGPVLENQLAYWKKAL
GTDLPVLDLPFDRPRPAIASFLGAQFAVSVDPALSGELRALARAHNVSLYVLLLSAFKLV
LHLYCDSDDIVVGSEVANRDRPETQAMIGPLVNTLVLRTDLAGNPDFSGLLQRVSETVRT
GLANQDVPYERIVEALNPKRSLSEMTPLFQAKFDLQHNLARLPELDGLAIETLRLPDGAA
KNEIRFNLEDNDPDIGGKIEYATDLFNEETVATIWRRFEDVLRTIAEDPARRLSEFSLLC
DDEQQEQIRRSAGQALTQSGLCLHEMLTAQATRTPEKSAVASEHGKLTYRELDQRSDAIA
AALAASGFGRGSIVGVCMQRTPDLIAALFGVLKAGAAYVPLDPDYPSERLAFIAQDAAIR
VVLTDSDRLAFDATVDLMLLEVGKLPDAVFSAAHACDPADLAYIIYTSGSTGRPKGVAIT
HGNAAARMQWTANNFTSDELASVLASTSVCFDLSIFEIFGTLSCGGQVVLANTLFDLPRL
QHVVEVSLINTVPSLLREYLRHDALPTSVSAVNLAGEPLPPVLLEELAKKAPQARIHNLY
GPSEDTTYSTGAMVRAVSGEKTVSIGAPLPGTQAYVLDRAGRLRPDGLAGELYLGGAGVT
RGYLRRPSQTAERFVPDAFSGRSSSYLYRTGDRVRRRADGALEFHGRLDNQVKIRGLRIE
IGEIEHQLEDIDGVNEAVIAVIGDEASPERQLAAYISLDAGRQLTVDDIRAALARQLPSH
LVPALWTILPAMPHLPNGKIDRSALRALEIKGPDGSGTAPRNHIEERLAAIWQDVLQTSL
IDVERSFFEMGGHSLLAIRIIARIKADFGVSLPLKAIFETPTIAGLANRLENEAEEALNI
DGLAVVHDPEDRHEPFPLTDIQHAYWIGRNKGFELGSVGSHGYREFDIDDLDIDALENAI
NALVARHDMLRAIVDTDGRQRVLADVPHYTLPVADLRDAVDRASRLTDIRNRLSHNIFKA
DHWPLFHIEAARLDGKTTRLFVSFDVLIGDAWSLKLMGTELAALMQKRALPEIGLTFRDY
VLFEKSAHNSAAYERAREHWSARMATLPASPDLPLACNPSQIEHPRFTRRRGRLAATDWS
RFKDVAQSAGLTPTAAIMTIFAEVLARWSRRQDFTLNLTVFNREPVHQDVEKIVGDFTAS
LLLGLDFSARADLTTRARQVQLRLMEDLEHRLFSGVSVLRELAKQNGRSGGALMPVVFTS
VLGQASRDDSAPRLDTRLVDSVSQTPQVYLDHQVSEDQGELVYNWDAVEELFPPSMLDMM
FAAYETLLRALANDDAAWQTEPDIVDCQAFETLNNRAKIALPDDTRLLHEAFFERAAESP
EKIAVCAGGIELTYGQVAERALALAASLQKAGAGPNDRVAVSLPKGADQVIACLGILASG
AAYVPVDPELPAERRFELVEDTAADLVIAEGGDWPQRVRVIAVPEEGGARPSPSSTTPSD
LAYIIFTSGSTGKPKGVMIDHRGALNTILDINRRFAVSAEDRVFALSSLSFDLSVYDIFG
PLAVGGAIVIPVREEVSDNARWMKLLLQHRVTVWNSVPALAQLLLAELPALREKPPLRMI
MMSGDWIPVSLPPALKAQLPDADLISLGGATEASIWSIFHPIGEALRDWTSIPYGQPLAN
QRWYVLDDQGRPCPPWVTGRLFIGGIGVARGYWGRPQLTAERFIPDSFADEEEAGNGALL
LYETGDLGRLRPEGLLEFLGREDFQVKVNGFRIELGEIETALLQNENVAEAVVTTMGQPP
ALIAYIVPDTKGSLIGKLEAKAGRSGNGGLGDAGRTVDLPTPDGLFHEAITRQSHRRFLN
APTELQKIGHLLASVRAFDISGTPLKKTLYPSAGGLYPVQTYILVQDGRVEGLSGGWYRH
HPAEHRLEFLAATSQEQIAAIAGKSDDIIGQCAFLVLFTGHAAAMARSYGQKSRDFCLLE
AGHMAQTMMLHAPRLDIGLCAAGGVDLTAIASALATEEDEEPLYVLAGGSIDPAWSTQWQ
ASAQMRGETLSERLRAFLAGKLPAYMVPREFVIMERLPLSANGKVDRQALPAPGGRARQT
VAPATENESALLAIWHELLSSDSAGVEDNFFEAGGDSLTIMQLLSRIRQEFSVHLTLAQL
FGATTVKAQSELLGSLSPSLPDEAETGISPIVAPTSVNDLSDDDVDKMLEQLLSGQKDQ