Protein Info for Atu3675 in Agrobacterium fabrum C58

Annotation: peptide synthetase, siderophore biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1520 PF18563: TubC_N" amino acids 7 to 56 (50 residues), 40 bits, see alignment (E = 1.4e-13) PF00668: Condensation" amino acids 79 to 516 (438 residues), 320 bits, see alignment E=1e-98 PF00501: AMP-binding" amino acids 538 to 877 (340 residues), 257.4 bits, see alignment E=8e-80 TIGR01733: amino acid adenylation domain" amino acids 563 to 953 (391 residues), 403.2 bits, see alignment E=1.2e-124 PF13193: AMP-binding_C" amino acids 937 to 1016 (80 residues), 44.9 bits, see alignment 7.3e-15 PF00550: PP-binding" amino acids 1043 to 1106 (64 residues), 42.3 bits, see alignment (E = 3e-14) TIGR01746: thioester reductase domain" amino acids 1145 to 1507 (363 residues), 403.9 bits, see alignment E=7.6e-125 PF01370: Epimerase" amino acids 1146 to 1394 (249 residues), 49.9 bits, see alignment E=1.2e-16 PF07993: NAD_binding_4" amino acids 1148 to 1384 (237 residues), 221.6 bits, see alignment E=4.2e-69 PF01073: 3Beta_HSD" amino acids 1148 to 1385 (238 residues), 24.1 bits, see alignment E=6.9e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3675)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFI7 at UniProt or InterPro

Protein Sequence (1520 amino acids)

>Atu3675 peptide synthetase, siderophore biosynthesis protein (Agrobacterium fabrum C58)
MNYIEPVETLITRLHQNNIRVWIDAGSLKCSDPDGHLNDAVMSEIRTRKTDILAFLNMAH
ADAATPGQNDIPPRNETCPPLSFAQERLWLIDQIYPGSALHHICIALEVRGALDLDALKV
ALAGVMSRHTVLRARIYSDKGVPKQTISAACDAPFSVVEISPAAAAMEDVIHAETSRPFD
LAAEPPIRLLVAKCDDGHHVLVFTLHHICADGWSTEILLKDLGAFYSAEVSGNATPEAEL
PIQYGDFAAWQRERLATEIAGTLDAFWKQHLSQPRQTTQLVTDMARTAGHGHAGELHDFT
IEKETADALRKIAAAHGTTLFTALFTAFNLLIHRYTGQTDLVIGTPVASRPHIETEDLVG
LFVNPLPVRSLVDPFGNFEKALRETHATLRQVISHQDMPFERIVDMVGVQRDPDSHPLFQ
IKFQLDAAPRERIRLPGLEMRRLARQDKVSRLDLCLDLRETEAGLSGTIEYKTALFRAET
IGLFASHFQQLLKSIAADPCLPVATLALLTQEEQRQRICDFNSTAQEHAGPQYFHELFEA
HVARAPQAAALIMPQADADDIMTYGELNARANRLARLLRRKGVSAETVVAISLPRSFDMI
VAWLAVWKAGGAYLPLDPEYPAERIGAMLSDAGARLVVSHSSIDLPKTANRLNLDEDFPD
DESADNLETVTHSSQLAYVIYTSGSTGKAKGVLVDHSGLINLTRDKIRACDVTADDCVLQ
FFSFSFDASIPELVMSLGAGARLLLLPRYATLPGAELADILRARHVTHLTMTPSALLSLP
VDDLLSLRTVLVGGEVPMPELIERWGKTRRFINAYGPTETTVNASMVDMGGGRAGLPVLR
PAANKQLYVLDDNLELLPFGVPGELHIGGCGIARGYHDRAALTAERFVPDPFATDGRAGV
LYRTGDRAVLLADGRIHVSGRLDSQVKIRGYRIEPGEIEARLLAHPAIVSATVAVRDDGR
GGKRLAAYAVPQIDQDAATRPTPSEIRAWLANRLPKFLVPDTFDWLEALPLTMNGKIDPL
KLPAPRAETDPDGRAPEGEMEGRIAGAFGHVLNIDQVAATDDFFTLGGHSLLATRFCAVA
KDKFGLDIGVIDLFNASTVEALANRLRTRDTGGSDDETLLLKRDIKLDDAIRPSATAKAT
SGTDHVFLTGATGFLGTYLLHELLRDPERKVTCLVRGDDGMSRLRQAFRQYDLPQSVLTE
RVTIVTGELSKPGLGLAAADYDNIVRNADCIFHNGAEVHHLHRYERLRETNVLGIREILQ
LACAGEGRHVHYISTLSALTPRRGSGGDPRPVCELESVEGFVPPAGGYNRSKWVAEHLVN
EAGRRGLPVTIYRPGAISGDSVTGAFNGSDILCRLVQAYLYTGTAPEGERLLDMLPVDHV
ARAIVHLSGKPASAGQVFHLIHSSPVSSARLFEACELEGIELKRVSQREWQDMLGDVARG
TPDHPLYPLLGLLRSPSAAGKSDEKQTRNFDCHLTQAALSDAPFREPALTFELLRTYLRA
FAKANFLNAASDDARKQGER