Protein Info for Atu3594 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 163 to 188 (26 residues), see Phobius details amino acids 199 to 217 (19 residues), see Phobius details PF01694: Rhomboid" amino acids 75 to 218 (144 residues), 117.7 bits, see alignment E=2.5e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3594)

Predicted SEED Role

"FIG056164: rhomboid family serine protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CSV4 at UniProt or InterPro

Protein Sequence (257 amino acids)

>Atu3594 hypothetical protein (Agrobacterium fabrum C58)
MFIPLHDANFLKHIRLQYVTIGLIVINVLVWLFTGVLASDVQANAAALGLGFIPAVVFDY
AYLEPALQVVPDDLTVVTYAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLVCA
IAGALFHGFVAPTSEGPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIPLA
LWIGQQFLMLALGLEQNVSWGAHVGGILAGAIMVIFMRRPDVPLFDRTIVAPRAAQFKNT
SQTAGLSQIERGYDGGR