Protein Info for Atu3564 in Agrobacterium fabrum C58

Annotation: endo-1,3-1,4-beta-glycanase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 PF00353: HemolysinCabind" amino acids 105 to 139 (35 residues), 26.6 bits, see alignment 7.2e-10 amino acids 114 to 148 (35 residues), 26 bits, see alignment 1.1e-09 PF00722: Glyco_hydro_16" amino acids 268 to 455 (188 residues), 103.7 bits, see alignment E=1.2e-33

Best Hits

Swiss-Prot: 70% identical to EXSH_RHIME: Endo-1,3-1,4-beta-glycanase ExsH (exsH) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to atu:Atu3564)

Predicted SEED Role

"Endo-1,3-1,4-beta-glycanase exsH (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CSS8 at UniProt or InterPro

Protein Sequence (465 amino acids)

>Atu3564 endo-1,3-1,4-beta-glycanase (Agrobacterium fabrum C58)
MARTVVNALGDTLYYSGSSTGFFSATGSGPLLGGTTGNDSMWGDSSVNVTMAGGTGDDIY
YLYSSINRAVENAGEGIDTIDTWMSYTLPENFENLRVTGDGRYAFGNSLDNIITGGSGSQ
TIDGGAGNDVLIGGGGADTFVFTSGNGTDLIMDFSANDTIRLNGYGVTSFDQLVNNATQQ
GNDLWLNFSNGEAVVLAGTTVDDLQADQFELSLDRSSFTQTFADEFDALSLRSGGQGIWD
AKYWWAPEKGSSLTANGEAQWYINPAYAGTTEVNPFSVQNGVLTITAAETAQSIADEVEG
YDYTSGMLNTYSSFSQTYGYFEIRADMPTDRGAWPAFWLLPEDGSWPPELDVIEMRGQNP
NTLIMSTHSNATGEQTSVINNVSVPNTEGFHTYGVLWDAEHITWYFDDVAVAQTETPDDM
HDPMYMVVNLAVGGMAGTPSASDFSDGSQMMIDYIRAYSLSDWAA