Protein Info for Atu3550 in Agrobacterium fabrum C58

Annotation: succinoglycan transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 14 to 40 (27 residues), see Phobius details amino acids 46 to 71 (26 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 328 to 346 (19 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 447 to 468 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 12 to 276 (265 residues), 82.3 bits, see alignment E=4.3e-27 PF13440: Polysacc_synt_3" amino acids 35 to 324 (290 residues), 213.4 bits, see alignment E=4.3e-67

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3550)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CSR5 at UniProt or InterPro

Protein Sequence (492 amino acids)

>Atu3550 succinoglycan transport protein (Agrobacterium fabrum C58)
MAEQHSIGSAALTGVFWSIVQNWGGKLFTSILFIVLARFLSPTDYGMVATAGLVLMLIQM
ISEFGFGDAIVQKRDLEPSDINLPFYASVTVATLLAITVCVFSSELERWFEVEGLAPIIV
AICILLPLNTASLFQEVNYRRALAFKPLAIRTFISNIVGGGVAIAFAIMGLGVWSLVVQT
YVATIVTLIWLWRKPHWLPSTTLNLRSFIQLFRFGSSALSLRSVEFASTRLIDFIILGRY
GVAAFGLYTVGSRLYQILMQLLQSALYDVSLTVLSRISHERERMAELYKQLIGISAIVST
PAFVLFAALAPEICRVLFGLAWQGADEIARPLLVLGALQCVQFQNGPFLSARGSPNKVLI
AGTVKSVSTILMILLIPTHSIGELVVIYVLGQLASTPFTFFYVSRELNVPLRRIILLLLP
SFVSNGVSFFVVELMRPEVASFGLGDFMAGLVLGFIFVVTYFSLMALVARRQAQAALLFV
TSKMLPRKEANA