Protein Info for Atu3523 in Agrobacterium fabrum C58

Annotation: polysaccharide biosynthesis-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 75 to 102 (28 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 254 to 282 (29 residues), see Phobius details amino acids 290 to 317 (28 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 44 to 319 (276 residues), 72.8 bits, see alignment E=5e-24 PF13440: Polysacc_synt_3" amino acids 63 to 321 (259 residues), 37.5 bits, see alignment E=2.4e-13 PF01554: MatE" amino acids 269 to 416 (148 residues), 26.4 bits, see alignment E=7.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3523)

Predicted SEED Role

"FIG00983504: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFB9 at UniProt or InterPro

Protein Sequence (471 amino acids)

>Atu3523 polysaccharide biosynthesis-like protein (Agrobacterium fabrum C58)
MAILNSAEKALPASLRAKLAPLAAKVAVLLSGRDEVSRAQRMALVAFAVRIVSAGIAFIS
QIILARLMGEFEYGLFAFVWVLVILFGNLSCLGFHTTVIRFLPGYRLEEAHDKIMGLTST
ARVFAMLAASALAIFGFVFLYFFGERIASYYLIPVALALFTLPMVALGDVLNGTARANGW
AVSALSPTYIVRPVLILLFMMAAVHFGAEKTATTAMLMALLATYVTTLFHFAFMNRRLNR
HFRSTARKVHFRHWIRFAFPMFLIDGIGFLMTNSDVVIVGLYLPPDQVGIYFAAAKTIVL
MQFVFFSVQAAAAPRLAALMSANDRQGLAGFAGQAARWAFWPSLAVGSVVLLAGPFLLSL
FGPGFVQGYQLMFFLFAGFLAKAMIGPGETLLNMAGKQKLCVVLYIIIFGCNIALNMALI
PVYGLAGAAAAVAIAMCMEAVLLHIAIRRTLGIVLFAFNDPRAGQDTGKAV