Protein Info for Atu3411 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 84 to 113 (30 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 248 to 271 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 279 (180 residues), 92.9 bits, see alignment E=1.1e-30

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu3411)

Predicted SEED Role

"Dipeptide transport system permease protein dppC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF62 at UniProt or InterPro

Protein Sequence (283 amino acids)

>Atu3411 ABC transporter permease (Agrobacterium fabrum C58)
MADHLKTYSGTSRLGYKINAVGIFAFLVIFIWAMVAIFAPYLIPYPVGDIVDLDYFGPMT
SDLWLGSDYLGRDVFSRILMGARFTVGISLAAVTIACVSGVVLGMCAAVVGGWFDAMLSR
FLDAVNSIPSKLFGLVVVAAVGSSIPVLIVTLSVIYTPGAYRFARALAVNVNTMDFVTVA
RVRGESLLYLISSEILPNIIRPVLADLGVRFVFIVLLLSGLSFLGLGLQPPNADWGALVR
ENIGGLPFAAPAVIFPSLAIASLTISVNLLIDNLPQKIRDRSE