Protein Info for Atu3381 in Agrobacterium fabrum C58

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00126: HTH_1" amino acids 3 to 61 (59 residues), 50.1 bits, see alignment E=2.1e-17 PF03466: LysR_substrate" amino acids 95 to 293 (199 residues), 127.3 bits, see alignment E=5.7e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3381)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF41 at UniProt or InterPro

Protein Sequence (301 amino acids)

>Atu3381 LysR family transcriptional regulator (Agrobacterium fabrum C58)
MNIKQLEVLRTLLSTGSTIATAKAMGLSQSGISRLLAQLEADLSLTLFARDKGRLIPTPE
AALLARDAENVLLAVDRMSGHAEDLRNGAAGPEIVRIGLPSSMWENFAPAMLIDYVRDFP
GVRIETFFETTTAINKLVGERVIDLGFLRMEGEIGPGIDVERVATGKSVCVVREDHPLAD
LQEITVKDLRNIPLILIGRQRPNRMALDQVFKKAGVKPMVKIETHTNSSACAYVAHGLGV
TIISSFYANLYRHLPVVARPFVPQATQEFGLARASGAPLSIAAQALSNALKREIQLSQKI
D