Protein Info for Atu3377 in Agrobacterium fabrum C58

Annotation: peptide ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 PF00005: ABC_tran" amino acids 24 to 183 (160 residues), 101.2 bits, see alignment E=2.3e-32 amino acids 300 to 447 (148 residues), 118.8 bits, see alignment E=8.1e-38 PF08352: oligo_HPY" amino acids 234 to 266 (33 residues), 32 bits, see alignment (E = 4.1e-11) amino acids 499 to 535 (37 residues), 26.6 bits, see alignment 1.9e-09

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu3377)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF38 at UniProt or InterPro

Protein Sequence (544 amino acids)

>Atu3377 peptide ABC transporter ATPase (Agrobacterium fabrum C58)
MTDNTLLTVRGLSLEVAGSGHRVVKDVSFDIAPGEIFGIVGESGSGKTLATRALISLLPP
AIAVTGGSVIYKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILH
TKLSPEERREKILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKPALLIADE
PTTALDAVIQRDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTE
DLLDAPRHPYTKKLLSSLPFRGEPRSIDTSKAPMVSARGIVVDYAGRKSLLKKAKPKRAL
HGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVKESEGHIRFQGRERNEDWNDYRLNCQ
MVFQDPYSSLDPRMTIQALVEEALRLVPGLDQAAKRKRALETLEEVGLGVDYAGRYPHEL
SGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDL
GVVEQVADRVVVMQDGRIIEEGDRDTIFDSPREAYTRRLLSAIPALDQNEKGGVTLKWRL
EDEA