Protein Info for Atu3358 in Agrobacterium fabrum C58

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 47 to 66 (20 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 14 to 204 (191 residues), 71.5 bits, see alignment E=4e-24

Best Hits

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 100% identity to atu:Atu3358)

Predicted SEED Role

"Amino acid ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CS93 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Atu3358 amino acid ABC transporter permease (Agrobacterium fabrum C58)
MTLILVAVTLPLSLVFGFIFAAMLTSGKVWLAGPVRAYVELTRNTPTLVQLMCGFLVLNM
LISNALGGAQNNPLTPFFWVVAITCLHVAAFHAEALRGGIEAVPTTTIEAARAIGFSSLE
ILRYVEFPLAIRTALPSIINNLVNLVKLTTVGSAIAVGEITYASILIWTQRDNVVELMLV
ILIFFSVINFIVARAGLWLERRLAVPGFGQ