Protein Info for Atu3350 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 170 to 197 (28 residues), see Phobius details amino acids 218 to 242 (25 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 126 to 305 (180 residues), 65.8 bits, see alignment E=2.2e-22

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu3350)

Predicted SEED Role

"ABC-type sugar transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF20 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Atu3350 ABC transporter permease (Agrobacterium fabrum C58)
MANISTLNTVVVATDAVAKDLSGPRGRKPRKTFSRRNIILYGTLFVAAAYYLLPLYVMVV
TSLKGMPEIRLGNIFAPPVEITFEPWVKAWANACTGLNCDGLSRGFWNSVRILVPSVVIS
IVVASVSGYAMANWKFKGSELFFSILIIGAFIPYQVMIYPIVIVLREMGIYGTLTGLVIV
HTIFGMPILTLLFRNYFASLPEELFKAARIDGANFWQIYFRIMLPMSLPIFVVAMILQVT
GIWNDFLFGVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATLLTGAVPLIVYFVSGR
LFVRGIAAGAVKG