Protein Info for Atu3332 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03734: YkuD" amino acids 84 to 164 (81 residues), 24.8 bits, see alignment E=1.4e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3332)

Predicted SEED Role

"probable exported protein STY0357"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CS68 at UniProt or InterPro

Protein Sequence (328 amino acids)

>Atu3332 hypothetical protein (Agrobacterium fabrum C58)
MAAVVAIGGSLVACTSMGLDSVKKDPPKLSSKMMAQMSAKSMRPESPVLVRIFKQESELE
VWKVDKTGNYALLKAYPMCRWSGKLGPKMKTGDRQAPEGFYHVSAGMLNPNSQYYVSFNL
GYPNRLESALGYTGEALMVHGACSSSGCYAMTDQQVGEIYAIVARALQGGQDRFQVQAYP
FRMSARNMVAHRDDPNMPFWKTLKEGYDYFEVTRRQPKVSVCGRRYVFNSEFDGGEPTDP
LAACPPAVNQPDPAVASKLAEEQQKLAAAMSEGTSAPLSAYVDGGMHPSFRALLKSSGAK
VMASQVSGTKYPISRPEAALADPFASVR