Protein Info for Atu3308 in Agrobacterium fabrum C58

Annotation: celB protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 799 to 820 (22 residues), see Phobius details PF03170: BcsB" amino acids 117 to 708 (592 residues), 313.9 bits, see alignment E=1e-97

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3308)

Predicted SEED Role

"Cyclic di-GMP binding protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CS46 at UniProt or InterPro

Protein Sequence (827 amino acids)

>Atu3308 celB protein (Agrobacterium fabrum C58)
MIGCKPIRGSLTVLICAVAAGAMAQSSPFDMTPERPAQTSPAPAPPAIPPVAPPPQPPVQ
VPTPTPGQPSAPPPFAVQPAPQRPAAAPLPPALVPPRQEGARPVPAPASSLNADSRRRYI
LPYEKLSLSGEIDRRQWSIYLTPEQANAAVSLNIGYQNAIVVAPESSNFQVSLNNVALDA
ARIEAPDSEGNVALKIPPGVLQVGSNVVTLGVQQRHRTDCTIQSTYDLWTDVNPANTYIG
FNSDVAGSFANIDDIQATGPDGKAMTSIEIVAPALGNPAFADSLLRLSQALALRTQMPNQ
TIRFVTAPSTERKAGTLTVFVGTAREIAGVAGALPPEASAGAFAGFGNAGPGNSSPLFVT
GPTPQAVQAAIETLFSSISRTPGAQRTTFSTRSWHAPDVPLVMSDRRIALSELGLQSTEF
SGRRFRTEFYVGMPADFYASAYGEASLLLDAAYSSQVLPGSHVDIYVNDQIASTVPISNN
GGGIFRHLPIKVTMRHFKPGPNKVTLEAVLMTAQDQACAPGAPASATPRFALFDTSEIHI
PNYAQIGRKPDLAAMAGAGQPYRTGGPVALSLDRFDTDTMSVAATLISRLASVAGHPIDI
ETVASPLVIGDRDALFVGTISQFPQALISQFNLVPSSQISWKMGTGVQVPAQNSDTLFND
WRERVDGGIWEGQVSSFEEWMKRNFDLSSDTLRFLPAAEQPYAPPGNVSFMLAQGLSPSG
EGVWTLATAPTSAELLDGMQAMTRENRWRDVTGRVAAYDAAAEKIETVEVERPNLYATRA
FSLSNWRLIAANWLSSNVLSYSLAFIGFVSLLGFATFVMLRMMGRHR