Protein Info for Atu3302 in Agrobacterium fabrum C58

Annotation: cellulose biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 PF13480: Acetyltransf_6" amino acids 185 to 330 (146 residues), 99.6 bits, see alignment E=2.8e-32 PF13432: TPR_16" amino acids 366 to 425 (60 residues), 25.1 bits, see alignment 2.8e-09 amino acids 435 to 491 (57 residues), 22.5 bits, see alignment 1.9e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3302)

Predicted SEED Role

"Cellulose biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CS43 at UniProt or InterPro

Protein Sequence (548 amino acids)

>Atu3302 cellulose biosynthesis protein (Agrobacterium fabrum C58)
MRIDIIDTDAGFEAIRENWDAVFMADPHARHFLSWGWLRDYMPRRKRWFILALRERTEGS
PYVAFFPLRLVTEPDKKTGRFHDSIVMAGNAAADYTGFISRPDYENHAIAGFCSYIRQQN
WTELKLDYLCGGPERRDAMIQALQGPLVMFRDSMPTNPYNINNCICPVVSLPETFDAYLE
SHMSSQTRQKLRRFLRKVEGGDEYRITFATRDTLKREMDILFDFWRVRWAPHKGKERTEL
LIGATRQMLMDVWLRGDLEVPVLWFGDQPLGALANIIDRQKKSVLFYITGRDEDWKTPSP
GLVLHGHCIRRAIEQGFKTYDFLRGNEPYKYFFGPEEHKLSCTLFRTRSGDNLGGTLHPR
SVRFVYEQALKLYKSGKKSEASIAFGQVLSAAPDHLGAQFGLANLAFDRGEFREAEIAFL
SLIAAGHEPVVLWLRIGETRLAQQHYHEASEAFRQVTNRAPFHREALYKCAVALIAAERQ
MEAAEILERLQHYHSDDAAHLEYAEKARAALARLEKAKTTVPLPPDVIKLAAKPKTTGKR
WHPPKVLH