Protein Info for Atu3286 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 59 to 79 (21 residues), see Phobius details amino acids 87 to 112 (26 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 66 to 243 (178 residues), 108.4 bits, see alignment E=1.8e-35

Best Hits

Swiss-Prot: 45% identical to Y355_HAEIN: Probable ABC transporter permease protein HI_0355 (HI_0355) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to atu:Atu3286)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEZ1 at UniProt or InterPro

Protein Sequence (261 amino acids)

>Atu3286 ABC transporter permease (Agrobacterium fabrum C58)
MRATHALNGLGLLLLLWQTGTWLFAPPRYILPSPADVAAAFWRQSGFLFGQAMVTLGEMA
LGLAAGVTAGILVAFTIAATPRFGRLVWPMVLVLQAFPVFVLAPILVLWFGFGMASKVVM
TAVIIFFPVASAFTDGLNRTDRAILDAASLTEASHWQILTRLRVPLALPSLISGLRVAAP
LAPLGAVIGEWVGASAGLGFVMIQSNARMQTDTMFAAMAILAVMAVLLRLIVDRATANLA
PWAKETEHTIPFRYLRRLSAP