Protein Info for Atu3254 in Agrobacterium fabrum C58

Annotation: dicarboxylate ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details PF04290: DctQ" amino acids 44 to 173 (130 residues), 94.7 bits, see alignment E=2.2e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3254)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEX6 at UniProt or InterPro

Protein Sequence (190 amino acids)

>Atu3254 dicarboxylate ABC transporter ATPase (Agrobacterium fabrum C58)
MSQEIHTQVTPEELAHTFDEAPPEVDLKVYAFEDWVTLALFWLMTGCVFLQFFTRYVLNN
SYAWTEEIAVNCLIGVVFLGSVMCVRMSRHIQVDVLYHYVPPQVAHAMSILVDVLRILFF
AYTSWLMWRYLEIVADEEMVTVALPRNIVFYTVLAAFVLMFFRSVQVFIENMRRGYSVLE
RPEEFQSAGD