Protein Info for Atu3224 in Agrobacterium fabrum C58

Annotation: ribose ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 301 to 326 (26 residues), see Phobius details PF02653: BPD_transp_2" amino acids 47 to 312 (266 residues), 150.8 bits, see alignment E=2.1e-48

Best Hits

Swiss-Prot: 61% identical to YTFT_ECOLI: Inner membrane ABC transporter permease protein YtfT (ytfT) from Escherichia coli (strain K12)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to atu:Atu3224)

MetaCyc: 61% identical to galactofuranose ABC transporter putative membrane subunit YtfT (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-491 [EC: 7.5.2.9]; 7.5.2.9 [EC: 7.5.2.9]

Predicted SEED Role

"Putative sugar ABC transport system, permease protein YtfT"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEW0 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Atu3224 ribose ABC transporter permease (Agrobacterium fabrum C58)
MMVAVTRRLKRLAPQLAALFIILAAITIISPGFLDVSLQNGRLYGSLIDILVRAAPVALL
TIGMTLVIATKGIDLSIGAVIAICGAVAATLISNGHSIPAVLAVSLAVGIACGLWNGVLV
ALLDIQPIIATLILMVAGRGIAQLITEGVILTFNDDGFAAIGSGSFAGVPLPVIIWVAAA
LVIGVLVRKSALGFLIEATGINRRAAALAGVRARFLLFFVYAVSGLCAAIAGMIVTADIR
GADANNAGLWLELDAILAVVIGGTSLNGGRFSITASLIGALIIQTINTGILVSGFPPEFN
LIIKAGIIMVVLTLQSPAIMAVLGFVRTPKPHAKPAAANGMTKEGTAR