Protein Info for Atu3157 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 55 to 83 (29 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details PF04290: DctQ" amino acids 28 to 155 (128 residues), 97.4 bits, see alignment E=3.3e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3157)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRR4 at UniProt or InterPro

Protein Sequence (183 amino acids)

>Atu3157 ABC transporter permease (Agrobacterium fabrum C58)
MRDTKPSVLGTIVKVIADIAAGAACAGILIVVLLQVIGRLIGNPLPWTEEATRFLFIWMV
FLGLAAGFRTVESARVVVFLVLFHRFFRRLAVPIYVGSSVFFFGMMGWTGFTLVRQQIMM
NETAATLPIPMWAIGMVLPVSAIIAVLAIIESLRSRRDLIALPELGLPADEIAHADISIS
AGH