Protein Info for Atu3149 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 73 to 98 (26 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 242 to 264 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 94 to 271 (178 residues), 61.8 bits, see alignment E=3.6e-21

Best Hits

KEGG orthology group: K10190, lactose/L-arabinose transport system permease protein (inferred from 100% identity to atu:Atu3149)

Predicted SEED Role

"N-Acetyl-D-glucosamine ABC transport system, permease protein 1" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRQ6 at UniProt or InterPro

Protein Sequence (278 amino acids)

>Atu3149 sugar ABC transporter permease (Agrobacterium fabrum C58)
MRSKSRSLFWQKMALHATLTPLAIIWLFPLWMMFVFSTMPDYGIFSPDIVLVPSTNFMEN
LSNLQADTNFLRAMFISITVAVIYTVLSVFLTSMAGWALARYRFAGRRVVIAIILGTITL
PFAVVVIPQFIMVAREFKLANTWIALIVPPLFNSLGVLFMRQSFSMMPTELFDAARVEGV
KEWQIFLRIALPLARPTMAALSIILFLASWNNYLWPLLINSRPGMMTAPVALGTLIGLTK
VSWGGIMAGAVLLTAPILVVFVALQRHFIAGISAGAVK