Protein Info for Atu3147 in Agrobacterium fabrum C58

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 667 PF01408: GFO_IDH_MocA" amino acids 7 to 120 (114 residues), 76.5 bits, see alignment E=4.5e-25 PF22725: GFO_IDH_MocA_C3" amino acids 135 to 258 (124 residues), 65.8 bits, see alignment E=5.7e-22 PF00248: Aldo_ket_red" amino acids 388 to 666 (279 residues), 158.3 bits, see alignment E=3.5e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3147)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CER3 at UniProt or InterPro

Protein Sequence (667 amino acids)

>Atu3147 oxidoreductase (Agrobacterium fabrum C58)
MTTEQPIRWGIIGPGTIAKTFADGIAHSRTGRLEAIATRNPDRPGLAEAFAGARIIKGYD
ALLADPDIDAVYISTPHTGHAEWAIKAIRAGKNVLVEKPIALSAYDADAIFHEAKKAGVF
AGEAYMYRLHPQTAKLLELVKSRAVGDIRIIRSSFGFNMGSFRADHRLFANEMAGGGILD
VGGYPVSMVRMIAGAVEGKPFVEPEKVAGAAHLGQSGVDEWASAVLKFANGIVAEVSCSI
MAAQDNVLRIIGSEGRIEVKDFWFAAGHKGGTGRIDIIRGDKVDTIELPEDRWLYSFEVD
AAGEAIRQGKKEFDAPGMAWADSLGNLRVMDQWRASVGLEYSVEKATSRIANIAGGTVVA
GNTVPKRQIPGLVKPASVIALGFEFFPNFASASLTLDAFYEAGGNLFDTAYVYGAGKTEA
IFGDWHTSRNVPRDEIVLIGKGAHSPLCYPDMIAKQLDQSLERLKTDYVDAYFMHRDNLD
VPVGEFVDVMDSEVRRGRIRGIFGGSNWTRERMDEAAAYAQKNGKQAPGALSNNFSLAEM
LDPIWAGCVAASDDEWKEWLKSRQIPNFAWSSQGRGFFTERAGRDKQDDEEIVRVWYSDR
NFVRRDRAIELAQKLGRHPIHIALAYVIAQPFPVIPLIGPRTIAELEDSLSALDIALTAE
QVKWLEA