Protein Info for Atu3143 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF04321: RmlD_sub_bind" amino acids 3 to 150 (148 residues), 27.4 bits, see alignment E=4.4e-10 PF01073: 3Beta_HSD" amino acids 5 to 115 (111 residues), 32 bits, see alignment E=1.6e-11 PF16363: GDP_Man_Dehyd" amino acids 5 to 157 (153 residues), 49.4 bits, see alignment E=1.2e-16 PF01370: Epimerase" amino acids 5 to 162 (158 residues), 70.4 bits, see alignment E=3.9e-23

Best Hits

Swiss-Prot: 100% identical to URODH_AGRFC: Uronate dehydrogenase (udh) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: None (inferred from 100% identity to atu:Atu3143)

MetaCyc: 100% identical to D-uronate dehydrogenase moomer (Agrobacterium fabrum C58)
Uronate dehydrogenase. [EC: 1.1.1.203]; 1.1.1.203 [EC: 1.1.1.203]

Predicted SEED Role

No annotation

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.203

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRQ0 at UniProt or InterPro

Protein Sequence (265 amino acids)

>Atu3143 hypothetical protein (Agrobacterium fabrum C58)
MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMV
AGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTE
RLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLSTWFSH
DDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDNSHLGFLGWKPKDNAEAFRRHITETTP
PPDPNDALVRFQGGTFVDNPIFKQS