Protein Info for Atu3133 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 280 (181 residues), 53.6 bits, see alignment E=1.2e-18

Best Hits

Swiss-Prot: 49% identical to YESP_BACSU: Probable ABC transporter permease protein YesP (yesP) from Bacillus subtilis (strain 168)

KEGG orthology group: K10193, oligogalacturonide transport system permease protein (inferred from 100% identity to atu:Atu3133)

MetaCyc: 33% identical to ABC-type sulfoquinovose transporter permease subunit (Clostridium sp. MSTE9)
7.5.2.-

Predicted SEED Role

"Putative ABC sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEQ5 at UniProt or InterPro

Protein Sequence (293 amino acids)

>Atu3133 sugar ABC transporter permease (Agrobacterium fabrum C58)
MKSQRFLGLGYLTPYIVGLLVFTAIPFLGSLYLSFTRYDLMSDPTWAGLANYERLFTRDR
TFMKSLNVTLFYVFLTVPLKLAFALFIAAILNYKLQFINFFRTAFYVPSILGGSIAIAVL
WRYIFASEGLANMALAAIGLSPVDWFGDPGNALFTITLLRCWQFGSAMVIFLAALQSIDK
SLYEAAAIDGAGKVKTFFFITLPLLTPVIFFNLIMQMVQAFQEFNGPYIITQGGPLKSTY
LLPLYIYDEAFKKFNMGYASAIAWVLFTIITVLTLVAFWSSKKWVYYAGDKRN