Protein Info for Atu3113 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 72 to 288 (217 residues), 55.2 bits, see alignment E=4e-19

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu3113)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRM7 at UniProt or InterPro

Protein Sequence (295 amino acids)

>Atu3113 sugar ABC transporter permease (Agrobacterium fabrum C58)
MRRMFDRNIHAYLFLLPWLIGFFGLTLGPALASLYLSFTNYDLLQSPDWVGAANYVRIAT
ADPKFAAAMQVTFTYVLLSVPLKLIFALLVALAFNRGIRGLTLYRAIFYLPSLLGSSVAI
AVLWRQLFASDGLVNMILWQAFGYEGPSWISNPDYSIYTLVILSVWQFGSPMIIFLAGLR
QIPQDMYEAAEIDGASKVRQFFRITLPLLTPVIFFNAVIQTIDAFKAFTPAFIISEGTGG
PINSTLFYTLYLYQEAFGFFRMGYASALAWILVIIISLFTAFSFLSAKYWVHYDD