Protein Info for Atu3104 in Agrobacterium fabrum C58

Annotation: alpha-L-arabinofuranosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 PF06964: Alpha-L-AF_C" amino acids 290 to 494 (205 residues), 149.4 bits, see alignment E=5.7e-48

Best Hits

Swiss-Prot: 57% identical to IABF_GEOSE: Intracellular exo-alpha-(1->5)-L-arabinofuranosidase (abfA) from Geobacillus stearothermophilus

KEGG orthology group: K01209, alpha-N-arabinofuranosidase [EC: 3.2.1.55] (inferred from 100% identity to atu:Atu3104)

MetaCyc: 57% identical to alpha-L-arabinofuranosidase 1 (Bacillus subtilis subtilis 168)
Alpha-N-arabinofuranosidase. [EC: 3.2.1.55]

Predicted SEED Role

"Alpha-N-arabinofuranosidase (EC 3.2.1.55)" in subsystem L-Arabinose utilization (EC 3.2.1.55)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.55

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEP1 at UniProt or InterPro

Protein Sequence (503 amino acids)

>Atu3104 alpha-L-arabinofuranosidase (Agrobacterium fabrum C58)
MKARVSVHRDFRIGRIDDRLYSAFIEHMGRAIYGGIYEPGHPQADANGFRKDVLKFVQDL
KIPAIRYPGGNFVSAYRWEDGIGPRDQRPIRLDLAWRSKETNQIGINEFADWAQMAGIEM
MLAVNLGSRGLDDARNFLEYVNFPGGTALSDLRRSHGTEKPHGVKMWCLGNEMDGPWQIG
HKTAVEYGRLANETAKAFKGFDPTIEAIVCGSSNDGMPTYPEWEREVLEECYENVDHISL
HKYFGNNSRDTLNYFGKIEETGRYIQTIAGVIDYVKAKKRAKNDVSICFDEWNVWYHIRE
DDGKRIKSWDWPEAPALLEETYNFEDALFVAGLLNEFIRRSDRVRIACIAQLVNVIAPIR
AEKNGPAWRQTIYYPYQFASLYGRGVALNVAVDCPTYDCNAADDVKYLDVAGVYDEAEGM
VTLFVLNRHLTEAADINVGLTGFSSATLDLHLAMAGYDLRVGNGPDQPDRVVPVPGSGVG
VEDGALKGSVSALSYHVLRLKVQ