Protein Info for Atu3072 in Agrobacterium fabrum C58

Annotation: peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1344 transmembrane" amino acids 650 to 675 (26 residues), see Phobius details amino acids 687 to 714 (28 residues), see Phobius details amino acids 734 to 757 (24 residues), see Phobius details amino acids 880 to 906 (27 residues), see Phobius details amino acids 919 to 941 (23 residues), see Phobius details amino acids 953 to 969 (17 residues), see Phobius details amino acids 974 to 992 (19 residues), see Phobius details amino acids 1128 to 1148 (21 residues), see Phobius details amino acids 1161 to 1187 (27 residues), see Phobius details PF00501: AMP-binding" amino acids 46 to 392 (347 residues), 274.3 bits, see alignment E=3.1e-85 TIGR01733: amino acid adenylation domain" amino acids 75 to 470 (396 residues), 439.8 bits, see alignment E=8.9e-136 PF13193: AMP-binding_C" amino acids 454 to 524 (71 residues), 30.2 bits, see alignment 1.4e-10 PF00550: PP-binding" amino acids 560 to 624 (65 residues), 35.3 bits, see alignment 2.2e-12 TIGR02353: non-ribosomal peptide synthetase terminal domain of unknown function" amino acids 651 to 1338 (688 residues), 987.3 bits, see alignment E=4.1e-301

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3072)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRI7 at UniProt or InterPro

Protein Sequence (1344 amino acids)

>Atu3072 peptide synthetase (Agrobacterium fabrum C58)
MPGAPMDRNVTAERQLEPTVFAPIAPSLPVREDEPYARDEMLHEIFEQTAKRFQAKCAVR
LLGHDPENSRRTRLSYAQLAERATRFARQLRAMGVQRGDRVVICLPRGLDQYMAILGTLW
AGACYVPVDWSYPQDRIDFIAEDSGATLIVTDAERAGGMRVTTLVVNETLGDLAAQDAVP
ITRAESGASPDDLAYIIYTSGTTGRPKGVMISHRSACHFLRSEGAILAIEESDRVFGGFS
IAFDMSIETMWSAFSAGAELLVATEALHKAGPDVGITLAAESVTVWHVVPSLFTLVEAEI
PTLRIVNLGGEACPPDLVERWARPGLRILNTYGPTETTVTATWTEVQPGRRVTIGRPLPG
YTAWIVDEKLWPVAAGAEGELVIGGPGLSGGYVNRPDLTADKFVNTPFYGPDGLPARIYR
SGDLVRLDAVGDIEFMGRIDTQVKIRGFRVELAEIEAVIAEDASVAQAVVHLFRDNDGSE
LLAAFLVARGNAAIDMEAARKRVNDRLPNYMRPVVYQVLDALPTLPASGKVDRKALQRPV
VVAVTDRETVAPETPLEIQLHAIWSEAFAPQKVSVEDDLFEDLGGHSLKAARLASAIRKS
SGLSGVSIQDLYAAPTIRRLAERLRDRVTADTAVLEPFHRVSEFQKRLCWALQTIALVPI
YAVAGLQWFFPYLAYTYLVEDFGRVSALLLGGLSFVFIPPLGMVFAIIVKWLIIGRYKPG
DYPLWGSYYLRWWLVRRLSDIIATPYLSGTPMIRFYYRLLGARIGRRAFIGTVSIDTADL
VTIGDDAIVSDYAMLATSSVERGLLRIGSVRIGNSAFIGTMSVVGRNSAIGDAAALDDLS
SLPMNQSIPSGESWSGSPAKCIATGRIAQRDGEAGFLRRLLVGFGLFIAAVILPLVAILP
IAPGLIAMIEIDWNTDGYSYLLISPFLALTYIILMCVLTVAAKRLILGPVRPGRYSIHSW
FYLRFWFVQQVTDLALALLHPIYATLYVIPWYRALGVRIGKRAEISTAAKIVPDLVDIGP
ESFIADAVVFGAARHEPGIIELAHTRIGRRSFIGNSAVLPTGATIADGVLIGVLSKPPAD
GGAEQPDGTWFGSPPISLPVRQAVGLFDEGARFNPRPRLVAMRLAIEAIRVILPLTLFLA
FFSLLFSVVGDIQDYDDSHLLIAVIFPFLYIGFALACGLSVVALKWLVMGRYKPTTKPLW
STFVWRTELVTATYENLAVPNLLQPLRGTPWLAFFLRLLGCKIGRDCFIDTTDITEHDLV
RIGDEVALNEFSGLQTHLFEDRVMKVSGVTVGDRAVIGSYAIVLYDAEIGEDAQLGDLSV
VMKGETLPAGTSWEGSPAQLVRNA