Protein Info for Atu3038 in Agrobacterium fabrum C58

Annotation: dipeptide ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 PF00005: ABC_tran" amino acids 25 to 187 (163 residues), 92.2 bits, see alignment E=2e-29 amino acids 303 to 445 (143 residues), 107.8 bits, see alignment E=3.2e-34 PF08352: oligo_HPY" amino acids 240 to 272 (33 residues), 21.5 bits, see alignment (E = 1.1e-07) amino acids 496 to 536 (41 residues), 31.5 bits, see alignment 8.7e-11

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu3038)

Predicted SEED Role

"Putative glutathione transporter, ATP-binding component" in subsystem Utilization of glutathione as a sulphur source

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEK6 at UniProt or InterPro

Protein Sequence (548 amino acids)

>Atu3038 dipeptide ABC transporter ATPase (Agrobacterium fabrum C58)
MTEPLLKVENLNVTFSNYGRTRQVLRNVAFTVAAGERVALIGETGSGKSVTAKTIIGTLP
KNAAITSGAIIIDGRDVLALPRREREALKGTAFSLIMQDPLSSFNPVFKIGTHLDDVMRF
ADKRDGINSSKAERRNRIAAVLRRVQLADTERVMNAYPSELSGGMRQRVLIGLALLHQPK
LLIADEPGTALDVTTQDEILNLINQLVAEENMALLMITHNLGVVRKVADRVVVMHHGDIV
ETGPCTQILHSPAADYTRSLLDAVPPLYGSRVTDLAQSTRQPIITIEGLNKIYGRRNGYH
AVRDVNITLKEGEVFGLAGESGSGKTSVARMIMGLSRPTSGNLVIDAPVPERGKRLTQIV
YQNPGTSLNPKRTVRQTLALPLKSIGMDGQVRESRMQELMELVRLPQSYLGKYPHELSGG
QKQRVAIARALAAEPKILILDEPTAALDVSVQKTVIDLLLQLRKELGLTYLMISHDLSLM
RNFCSRIAIMLRGEIVEEGVTSAVFAEPSHPYTRALIAAIPVVTDEEERLKPTVTEEERM
RFLVKTTD