Protein Info for Atu3037 in Agrobacterium fabrum C58

Annotation: dipeptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 95 to 121 (27 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 221 to 240 (20 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details PF12911: OppC_N" amino acids 19 to 70 (52 residues), 47.5 bits, see alignment 1.3e-16 PF00528: BPD_transp_1" amino acids 111 to 290 (180 residues), 85.8 bits, see alignment E=3.2e-28

Best Hits

Swiss-Prot: 39% identical to APPC_BACSU: Oligopeptide transport system permease protein AppC (appC) from Bacillus subtilis (strain 168)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu3037)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEK5 at UniProt or InterPro

Protein Sequence (293 amino acids)

>Atu3037 dipeptide ABC transporter permease (Agrobacterium fabrum C58)
MADMKMLEPTDRGLSAGYMMWYRFSRNPAAVIGSLILLSVLVLAVFAPWLTPYPKHIGAV
VDFRARHMPPDLEHWFGTDKAGRDIFSRTIFGLRVSLLLVIGVLGISVPVGTVLGLVAGY
FGGWTEKLISGLTNVMLAMPPLVMALAVSNLLEPTLTNAMIAITLLWWTWHARLIYSVSK
SIASEDYIEAARLAGAGPLHILFREILPNCVSVISVKTTLDAAFVILFGATLSFLGFGVK
PPTPDLGSMVADGRQFMPDFWWEVLCPGAAVLYVTLGFNLLGDGLRDMFDVES