Protein Info for Atu3006 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 transmembrane" amino acids 41 to 60 (20 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 237 to 254 (18 residues), see Phobius details amino acids 259 to 276 (18 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 367 to 391 (25 residues), see Phobius details amino acids 397 to 413 (17 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details PF04932: Wzy_C" amino acids 244 to 382 (139 residues), 32.4 bits, see alignment E=3.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3006)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEI7 at UniProt or InterPro

Protein Sequence (472 amino acids)

>Atu3006 hypothetical protein (Agrobacterium fabrum C58)
MRLFKLHRRRLNKLRRYNDLPSFIEALPLYPTRIIVSRGIVRLYIFLFGFLSQCNVIPTA
FGLPFLRITDMLVISTLPILYLVYIRLFNSALILTHIAPIMFAFLTCLFFFTDRRQGELY
SSVFTFLYLLYFLPFTFALLREGCLDLFCWGILAGFATTTIFLLIDLYVPYTLTKIGLAL
VFDYEAVADAAAKGDYNAPLLRFEKAGGLWTHGNEAGPVFALAAAAAASLTERRRNFFIF
ASFVAIYLVSFSATLNRSGMGTVVLIGLISYMSSFSNRKITLTLVYGCIGTLIGSMVIFF
GSFDLLDGAISKRFLEDENASSNIFERLESLGYGIQVALHNPFGIGLAARMAAMNAFSNL
GTPHNGFVSTAFTSGILVGFFVVSSVAYMLFRYRKVRFFLYVAVTLTCGYFFEELDFNAA
FMCWAGLLIGYTCLDLDYRLVRGRAILRYLLKLFKSQQSVCPEATSLSSVNS