Protein Info for Atu2753 in Agrobacterium fabrum C58

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 PF22527: DEXQc_Suv3" amino acids 6 to 138 (133 residues), 90.3 bits, see alignment E=9.8e-30 PF00271: Helicase_C" amino acids 165 to 266 (102 residues), 33.4 bits, see alignment E=4.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2753)

Predicted SEED Role

"ATP-DEPENDENT DNA HELICASE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHE4 at UniProt or InterPro

Protein Sequence (1032 amino acids)

>Atu2753 ATP-dependent helicase (Agrobacterium fabrum C58)
MILSGRGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNVA
LITGEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGRE
ETLLLGAGTMRPILEKLLPGITVVERPRLSQLFYAGQKKITRLPQRTAIVAFSAEEVYAI
AELVRRQRGGAAVVMGALSPRTRNAQVGLYQSGDVEYLVATDAIGMGLNLDVDHVAFAQD
RKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDELVERIETHQFDAVKVL
QWRTKNFDFSSIANLRLSLDAAPTIQGLSRALPAIDQQALEYLSRYPEIIDVTTTDARVE
KLWEACALPDYRRIAPAQHADLISTLYFDLVKRGTVNEDFMAEQVRRADRTDGEIDTLSA
RIAQIRTWTYVSNRPGWLADPTHWQEKTREIEDRLSDALHERLTKRFVDRRTSVLMRRLR
ENAMLEAEISVNGDVFVEGHHVGQLAGFRFTPVSGMEGPDQKAVQAASQKALALEYEARA
ARLHASGNGDLALSSDGLVRWLGEPVARLAAGDNIMKPRVILLADEQLSGNARDHALARV
ERFVNHQIATVLKPLDDISRAEDLQGLAKGLAFQLVENLGVLFRRDVTEDVKSLDQDARA
SMRRYGVRFGAYHVFLPALLKPAPAELVTLLWALKNDGLGKPGYGDLIPVLAAGRTSVVT
DASFERMFYKLAGFRFLGKRAVRIDILERLADLIRPLLQWKPGQQPRPEGAYDGRRFTTT
TAMLSILGATLDDMEEILKGLGYRADQVTAEEAQAFLASQAGAAAPVAAEAVTGEEENAE
TEQDEPASEQQETETAVVAEGDASEAPVAEAVGEEVAAGEAASAEGAELSEPKPVLLWRP
GGRNENQRGENRRPGHRGQARDGAREQGERRGEGRRDNRDGANRDNNRDGANREAANRGS
DGERKRDGGRPDRGNNRNNDRGERKDRPERNDRGGKTQGQQRFEAKPPRKEKPMDPDSPF
AKLAALKEQLKK