Protein Info for Atu2696 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13483: Lactamase_B_3" amino acids 95 to 251 (157 residues), 59 bits, see alignment E=8.8e-20 PF00753: Lactamase_B" amino acids 97 to 159 (63 residues), 29.7 bits, see alignment E=9e-11 PF12706: Lactamase_B_2" amino acids 112 to 311 (200 residues), 117.3 bits, see alignment E=1.1e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2696)

Predicted SEED Role

"Bll0480 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWG4 at UniProt or InterPro

Protein Sequence (356 amino acids)

>Atu2696 hypothetical protein (Agrobacterium fabrum C58)
MKRRNFFRFSALGLLALAGGGLYARRSSASAYYSGPISDHFDGVRFFNPGGTPPGNFMGL
LKWRFNGERATWPETYPSPFPFAKPEARIDGRDMRVTFVGHASFLIQTAGLNILVDPVWS
QRTSPLSFAGPKRVNPPGIRFEDLPPIDLVLVTHNHYDHLDMETLKRLHVAHKPLFITPL
GNDAVIRTGVEAARIKVGDWGDVVETGSVKIHFEPCHHWSARGLNDRSMALWAAFVIETP
GGKIYHIGDTGFHEGLNYGAARKKHGEFRLANLPFGAYEPRWFMKGQHQNPAEAVEGMRL
CGAAHVCGHHWGTVQLTDEAVDAPLAALKAALTEQGVEESRFRPMRPGEVFDVPSA