Protein Info for Atu2691 in Agrobacterium fabrum C58

Annotation: GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 206 to 363 (158 residues), 123.5 bits, see alignment E=3.5e-40 PF00990: GGDEF" amino acids 207 to 360 (154 residues), 122 bits, see alignment E=1.1e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2691)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWG7 at UniProt or InterPro

Protein Sequence (381 amino acids)

>Atu2691 GGDEF family protein (Agrobacterium fabrum C58)
MLTFGVVFLFLHRIGHASARYWGIGYLAAAFGFATPLVLGGLPFEVQAILSNLLFFSAFF
LYGHALLTHFERPLYTKARLSIVAVAVLLVSFHVFVTPDLKRELVIGDLVCALLLAFPVW
LVRKRPVALADRLMVAIASLVVLETLVRIGMLLVMTPGGSMIELSEFFESDYAFYMQLAA
SIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLNRRGFDRRVPDFRNDTPDGAIIAC
DIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPDDALVARFGGEEFVVFLPGQTAAAAGQ
LANGMRTGLSSLDWRNRGVTSQITASFGVSAVARGDHSIHDAIKRADDSLYAAKRGGRDQ
VVLEGIRLPAEGPALRVITKA