Protein Info for Atu2629 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details PF01963: TraB_PrgY_gumN" amino acids 90 to 363 (274 residues), 245.1 bits, see alignment E=5.8e-77

Best Hits

KEGG orthology group: K09973, hypothetical protein (inferred from 100% identity to atu:Atu2629)

Predicted SEED Role

"FIG00450913: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U533 at UniProt or InterPro

Protein Sequence (365 amino acids)

>Atu2629 hypothetical protein (Agrobacterium fabrum C58)
MHSLIKPENLTATLMGKTGDALLWLLAALHVTAVAILLMTLLSLSEAGAAEQKIACTGSD
ILVEMRKTDPQAFAKIEQEAAAIPNGKGNFWRIEKAGTAPSYLLGTMHVTDPRVLEMPTA
ASPAFEKAATVIVESDEIVDDKKVAASLLSKPELTMFLNGKSITDILSSENVARLEKGLK
ERGIPLNAVSRMKPWMLSSFVALPACEFARKATGLSFLDKKLAEDAIADGKRLVGLETMV
EQLTAMSELPMEFHLQALIETLELGDRMDDVMTTMTDLYVAGDIGMTMPMLKSIDPKKTA
VESEQGYAAFEQRIITDRNHVMADRATPELAKGNVFMAVGALHLPGEEGLVELLRAEGFT
LTRVD