Protein Info for Atu2624 in Agrobacterium fabrum C58

Annotation: ATP synthase alpha chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 TIGR00962: ATP synthase F1, alpha subunit" amino acids 3 to 508 (506 residues), 827.5 bits, see alignment E=2e-253 PF02874: ATP-synt_ab_N" amino acids 25 to 92 (68 residues), 72.9 bits, see alignment E=3.7e-24 PF00006: ATP-synt_ab" amino acids 149 to 372 (224 residues), 270.7 bits, see alignment E=1.3e-84 PF00306: ATP-synt_ab_C" amino acids 379 to 504 (126 residues), 167.4 bits, see alignment E=2.7e-53

Best Hits

Swiss-Prot: 100% identical to ATPA_AGRFC: ATP synthase subunit alpha (atpA) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02111, F-type H+-transporting ATPase subunit alpha [EC: 3.6.3.14] (inferred from 100% identity to atu:Atu2624)

MetaCyc: 72% identical to ATP synthase subunit alpha, mitochondrial (Homo sapiens)

Predicted SEED Role

"ATP synthase alpha chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UC74 at UniProt or InterPro

Protein Sequence (509 amino acids)

>Atu2624 ATP synthase alpha chain (Agrobacterium fabrum C58)
MDIRAAEISAILKDQIKNFGNEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIR
GMALNLEADNVGVVIFGSDRSIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGP
INAAKRSRVDVKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIIL
DTILNQKAIHDNGPDGDKLYCVYVAIGQKRSTVAQFVKVLEERGALQYSIIVAATASDPA
PMQYLAPFAGCAMGEYFRDNGKHALIGYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFY
LHSRLLERAAKLSDEMGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQG
IRPAVNVGLSVSRVGSAAQIKAMKQVAGSIKGELAQYREMAAFAQFGSDLDASTQRLLNR
GARLTELLKQPQFSPLKTEEQVAVIFAGVNGYLDKIPVAQVGKFEQGFLSYLRSEGKAIL
DTIRTEKAISDDTKGKLKGALDNFAKSFS