Protein Info for Atu2610 in Agrobacterium fabrum C58

Annotation: FAD-dependent monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 PF01494: FAD_binding_3" amino acids 25 to 366 (342 residues), 176.9 bits, see alignment E=1e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2610)

Predicted SEED Role

"FAD-dependent monooxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHK7 at UniProt or InterPro

Protein Sequence (423 amino acids)

>Atu2610 FAD-dependent monooxygenase (Agrobacterium fabrum C58)
MGARVMEDAKAGHEKDGRAVQNIHTCVAVAGGGPAGMMLGLLLARSGIDVVVVEKHGDFL
RDFRGDTIHPSTLELMEQLGFIDEFLSLPHTRAPRLNAVIGGERVTIADFSRLPVRHRFI
AFMPQWDFLNFIVGKAGQYENFRLLMNAPVTGLIERDGRVGGLTVETPEGVIEIAADLVV
GADGRNSIVREAAGLEVQRFGIPTEVLWLRLSKQPDDPTETMGHAGSRQGFVMINRGDYW
QCGYVVRKGFFADIKLEGLEAFRYRVAEICPFPRERLDELKSWDDVHLLTVRIDRLKRWW
KPGLICIGDAAHAMSPVGGVGVNLAIQDAVAAANILVPVLVSGRAIRDDDLAAIEKRRSF
PTKATQFLQRMMRIGRKKGQEERAEKPKGPPAFVRAIIRFPLLSHLTGRLVGLGFRREKI
ETP