Protein Info for Atu2589 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (oligopeptide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 54 to 76 (23 residues), see Phobius details amino acids 184 to 211 (28 residues), see Phobius details amino acids 226 to 267 (42 residues), see Phobius details amino acids 310 to 335 (26 residues), see Phobius details amino acids 356 to 379 (24 residues), see Phobius details PF12911: OppC_N" amino acids 40 to 92 (53 residues), 49 bits, see alignment 4.6e-17 PF00528: BPD_transp_1" amino acids 202 to 389 (188 residues), 90.7 bits, see alignment E=1e-29

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu2589)

Predicted SEED Role

"Oligopeptide ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHM0 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Atu2589 ABC transporter, membrane spanning protein (oligopeptide) (Agrobacterium fabrum C58)
MTSSIPKSGEALPHYVSTAPFDPSLIEPNTSGMAAFSKASQLKLMWWQFRQHKIAVWSGA
FLALIYLSILISEFLAPYNLHTRNIEHIYAPPQAIHLFDDGKFVGPFVYGREMTLDMDNL
RRVYRDVPTDIQPLRFFCKGDTYRFWGMFEGRTHFVCPAEGGEMFLLGTDRLGRDVLSRI
IYGARISLTIGLLGVAMSFVLGIVIGGLAGYRGGTFDLIVQRIIEVLQSIPSIPLWLALA
AIMPVTWSPILVYLGITIILGMLDWTGLARAVRSKLLALREEDYVLSAQLMGAGTPRIIG
RHLIPGFMSHLIASATLTIPGMILGETALSFLGLGLRPPITSWGILLTEARSVSVIALYP
WLLIPTIPVVLVILAFNFFGDGLRDAADPFR