Protein Info for Atu2550 in Agrobacterium fabrum C58

Annotation: RND multidrug efflux membrane permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 42 to 375 (334 residues), 234.1 bits, see alignment E=9.8e-74 PF16576: HlyD_D23" amino acids 66 to 294 (229 residues), 41.8 bits, see alignment E=1.9e-14 PF13533: Biotin_lipoyl_2" amino acids 68 to 114 (47 residues), 41.7 bits, see alignment 1.9e-14 PF00529: CusB_dom_1" amino acids 307 to 361 (55 residues), 29.7 bits, see alignment 1.3e-10

Best Hits

Swiss-Prot: 40% identical to ACRA_ECOLI: Multidrug efflux pump subunit AcrA (acrA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to atu:Atu2550)

MetaCyc: 40% identical to multidrug efflux pump membrane fusion lipoprotein AcrA (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-1551; TRANS-RXN-1552; TRANS-RXN-354; TRANS-RXN-355; TRANS-RXN-356; TRANS-RXN-357; TRANS-RXN-359; TRANS-RXN-360; TRANS-RXN0-592

Predicted SEED Role

"RND efflux system, membrane fusion protein CmeA" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWT1 at UniProt or InterPro

Protein Sequence (400 amino acids)

>Atu2550 RND multidrug efflux membrane permease (Agrobacterium fabrum C58)
MSRRILPLFASLCVTAVLAGCSDGGESSKSAGQGAERPPSPVSVIVMKTSEYPLTTVLPG
RASAFQTAEIRPRVTGIIREIPFKEGSEVKQGDVLYQIEDNTYLAEVAQAKASVAKAEAS
VPSAQANLARYERLVNSGATQIEYENAKVTLLQAQADVAQTKAALETAEINLDLTKVRAP
FDGITSATAFSIGNVVTANQTTALTTLRRIDPIYIDLMESSTNLLRLKKAISSGQLGGDT
KETGIHLTLEDGTEYKHDGKIDMSDMAVSETTGTFSIRALFENPDDLLLPGTYVRATLTI
GKEKGFRIPQRAASRNASGELTAKFVTAENKVETRTFPSSQQSGNAWLVTENVKDGDKLI
VDGFQWIAEGATVAPVEVTIDDRGIVVLPQQAPPAAAPTK