Protein Info for Atu2514 in Agrobacterium fabrum C58
Annotation: ABC transporter, nucleotide binding/ATPase protein (dipeptide)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 39% identical to OPPF_BACSU: Oligopeptide transport ATP-binding protein OppF (oppF) from Bacillus subtilis (strain 168)
KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu2514)Predicted SEED Role
"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A9CHQ3 at UniProt or InterPro
Protein Sequence (246 amino acids)
>Atu2514 ABC transporter, nucleotide binding/ATPase protein (dipeptide) (Agrobacterium fabrum C58) MIDVDNLRIKFGDREVVKGVSFSVEKGGSFGIVGESGSGKSTILRAMAGLNESWEGRIAF AGKDAPLKRTPDFFRQVQMVFQDPYGSLHPRQTIDRILSELPLVHGMDNIEKRIQQALSD VALPQAVRFRFPHQLSGGQRQRVAIARALIADPEVLLLDEPTSALDVSVQAEILNLLQDL RAARNLTYILVSHNLAVIAHLCPQVGVMLNGEMVEQLSAGDLREGRTKHPHTEELRSLSI RLEEPA