Protein Info for Atu2471 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 transmembrane" amino acids 20 to 49 (30 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 109 to 135 (27 residues), see Phobius details amino acids 147 to 163 (17 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 200 to 224 (25 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details amino acids 355 to 381 (27 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details amino acids 417 to 443 (27 residues), see Phobius details amino acids 464 to 488 (25 residues), see Phobius details PF01970: TctA" amino acids 20 to 438 (419 residues), 509.5 bits, see alignment E=3.1e-157

Best Hits

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 100% identity to atu:Atu2471)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHS8 at UniProt or InterPro

Protein Sequence (505 amino acids)

>Atu2471 hypothetical protein (Agrobacterium fabrum C58)
MSTFEFLLHGLEVAAQPMNLLYALIGVTLGTAVGVLPGIGPALTVALLLPVTYRLDPAGS
LIMFAGIYYGGMYGGSTTSILLNTPGESASIVTALEGNKMARKGRGGPALATAAIGSFVA
GLIATIALAFVAPYIVKLALVFGPREYFALMVLAFVTVSSAFGDSALRGLTSLFIGFALA
IVGIDQLTGQTRMSFGIPDLLDGVEVTTLAVAMFAIGETLFIVAQGNSGDEKVEAVKGSV
WMSAQDWARSWKPWLRGTLIGFPIGAMPAGGAEIGTFLSYATEKKLTKYPEEFGHGAIEG
VAGPEAANNASAAGTLVPLLTLGLPTTATAAIMLAGFQQFGLQPGPLLFATNPQLVWGLI
ASLFIANLMLLVLNLPLVGLWVKLLTIPKPWLYAGILLFATLGTIGANPSVFELGMLLAF
GILGYIMRIFGYPIAPAVVGLILGPLAEQQLRRALAIGQGDPTVLLTSPIAVGLFIVAAA
AFIVPLIMRIRGRGEVLSQLAANED