Protein Info for Atu2448 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 43 to 63 (21 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 278 to 294 (17 residues), see Phobius details PF00892: EamA" amino acids 11 to 144 (134 residues), 73.5 bits, see alignment E=2.2e-24 amino acids 161 to 293 (133 residues), 74.4 bits, see alignment E=1.2e-24 PF06027: SLC35F" amino acids 14 to 290 (277 residues), 21.3 bits, see alignment E=1.8e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2448)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHU2 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Atu2448 hypothetical protein (Agrobacterium fabrum C58)
MKKRNISVPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAVAIIFAISVP
QLIKDWPVVKQRLPYFFVLGSVGYTAFNVFLYTALQHTSAINAAVIQAGIPMVIFVLNFV
LFRTRVLFGQIAGFCLTISGVALLASHGDPLSLLQLEMNVGDAVMLLAVLVYAIYTVILR
WKPAVDWRTLMAIPAFFALLTSVPLVFFEMSRESLIWPDQKGWMLVVYAGIFASLIAQIL
YIKGVEQIGANRAGLFINLVPVFGTLLSVFVLSETLHTYQIAALFMALAGIAVAERKKSP
AS